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Validation and Optimization of a Structure-Based Enzyme Engineering Platform

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Master_dissertation_João_Correia.pdf8.64 MBAdobe PDF Ver/Abrir

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"Organismsandenzymesarecurrentlyusedforcatalyzingtheproductionofvalue- added compounds,indiverseareaswitheconomicimpact.However,poorprotein expression, lowcatalyticlevels,lowconcentrationsofco-factorsorsubstrates,toxicity towardsthefinalproductandotherfactors,allcontributetothelowperformanceof microorganismsandenzymesintheseareas.Proteinengineeringisaneffectivestrategy forimprovingbiosyntheticpathwaysandovercomingtheseproblems,byre-designingan enzyme’scatalyticpropertiesinfavorofacertainreaction. Toaddressthisproblem,theProteinModelingLaboratoryofITQBNOVAdeveloped an automatedplatformforgenediscoveryandenzymeengineering,whichaimstoenhance or changetheenzymesthatcatalyzethelimitingstepsinpathwaysthatcanbeexploited fortheproductionofaddedvaluecompounds.Theobjectivesrangedfromincreasing an enzyme’sefficiencytoenablingittocatalyzeadifferenttransformationthantheone catalyzedbythewild-typesequence.(...)"

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Enzyme engineering Machine learning Scoringfunctions Biosyntheticpathways Automatedplatform

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