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Structural Insights Into CO2 Transport Pathways in a W-Formate Dehydrogenase
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Orientador(es)
Resumo(s)
Mo/W-dependent formate dehydrogenases (Fdhs) catalyze the reversible reduction of CO2 to formate and are key biocatalysts with high potential for CO2 capture/conversion technologies. Although previous studies have suggested the presence of two substrate-access tunnels in Fdhs, experimental evidence for CO2-specific pathways has been lacking. Here, we present an integrated study of Nitratidesulfovibrio vulgaris FdhAB combining crystallography, molecular dynamics simulations, mutagenesis, and kinetic assays. NvFdhAB crystals pressurized with Kr, O2, and CO2 were used to map gas diffusion routes and uncovered a substrate-retention site consistently occupied by small molecules in multiple crystal structures. Our results indicate that both substrates mostly use the main tunnel to reach this retention site, but H2O and CO2 can also enter through a novel side branch before following a shared route to the buried W active site. The retention site, located at the junction of both tunnels, plays a synergistic role in enhancing CO2 reduction by increasing substrate concentration near the catalytic center, thereby improving catalytic efficiency. Notably, variants affecting this site showed a selective effect for CO2 reduction, with no impact on formate oxidation. These findings provide experimental evidence of a CO2-specific pathway and identify structural determinants underpinning efficient CO2 reduction in this enzyme family.
Descrição
We acknowledgethe European Synchrotron Radiation Facility for provision of synchrotronradiation facilities, and we would like to thank the staff of the ESRF andEMBL Grenoble for assistance and support in using beamlines ID23-1, ID23-2, ID30A-3, and ID30B. Development of AMBER parameters forMD simulations was supported by the European Union’s HORIZON-EIC-2023- PATHFINDEROPEN-01 project W-BioCat. We also acknowledgeJoão Carita for the technical input and work on N. vulgaris cellgrowths. We gratefully acknowledge Polish high-performance computinginfrastructure PLGrid (HPC Centres: ACK Cyfronet AGH) for provid-ing computer facilities and support within computational grant nos.PLG/2025/018297 and PLG/2025/018449. Open access publication funding provided by FCT (b-on).
Publisher Copyright:
© 2026 The Author(s). Angewandte Chemie International Edition published by Wiley-VCH GmbH.
Palavras-chave
CO reduction gas soaking metal-dependent formate dehydrogenases substrate tunnel x-ray crystallography Catalysis General Chemistry