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Unraveling the Complexity of DNA Radiation Damage Using DNA Nanotechnology

dc.contributor.authorAmeixa, João
dc.contributor.authorBald, Ilko
dc.contributor.institutionCeFITec – Centro de Física e Investigação Tecnológica
dc.contributor.institutionDF – Departamento de Física
dc.contributor.pblACS - American Chemical Society
dc.date.accessioned2024-09-29T22:22:02Z
dc.date.available2024-09-29T22:22:02Z
dc.date.issued2024-06-04
dc.descriptionFunding Information: I.B. acknowledges financial support from the German Research Foundation (project no. 450169704). Publisher Copyright: © 2024 The Authors. Published by American Chemical Society.
dc.description.abstractRadiation cancer therapies use different ionizing radiation qualities that damage DNA molecules in tumor cells by a yet not completely understood plethora of mechanisms and processes. While the direct action of the radiation is significant, the byproducts of the water radiolysis, mainly secondary low-energy electrons (LEEs, <20 eV) and reactive oxygen species (ROS), can also efficiently cause DNA damage, in terms of DNA strand breakage or DNA interstrand cross-linking. As a result, these types of DNA damage evolve into mutations hindering DNA replication, leading to cancer cell death. Concomitant chemo-radiotherapy explores the addition of radiosensitizing therapeutics commonly targeting DNA, such as platinum derivatives and halogenated nucleosides, to enhance the harmful effects of ionizing radiation on the DNA molecule. Further complicating the landscape of DNA damage are secondary structures such as G-quadruplexes occurring in telomeric DNA. These structures protect DNA from radiation damage, rendering them as promising targets for new and more selective cancer radiation treatments, rather than targeting linear DNA. However, despite extensive research, there is no single paradigm approach to understanding the mysterious way in which ionizing radiation causes DNA damage. This is due to the multidisciplinary nature of the field of research, which deals with multiple levels of biological organization, from the molecular building blocks of life toward cells and organisms, as well as with complex multiscale radiation-induced effects. Also, intrinsic DNA features, such as DNA topology and specific oligonucleotide sequences, strongly influence its response to damage from ionizing radiation. In this Account, we present our studies focused on the absolute quantification of photon- and low-energy electron-induced DNA damage in strategically selected target DNA sequences. Our methodology involves using DNA origami nanostructures, specifically the Rothemund triangle, as a platform to expose DNA sequences to either low-energy electrons or vacuum-ultraviolet (VUV, <15 eV) photons and subsequent atomic force microscopy (AFM) analysis. Through this approach, the effects of the DNA sequence, incorporation of halogenated radiosensitizers, DNA topology, and the radiation quality on radiation-induced DNA strand breakage have been systematically assessed and correlated with fundamental photon- and electron-driven mechanisms underlying DNA radiation damage. At lower energies, these mechanisms include dissociative electron attachment (DEA), where electrons attach to DNA molecules causing strand breaks, and dissociative photoexcitation of DNA. Additionally, further dissociative processes such as photoionization and electron impact contribute to the complex cascade of DNA damage events induced by ionizing radiation. We expect that emerging DNA origami-based approaches will lead to a paradigm shift in research fields associated with DNA damage and suggest future directions, which can foster the development of technological applications in nanomedicine, e.g., optimized cancer treatments or the molecular design of optimized radiosensitizing therapeutics.en
dc.description.versionpublishersversion
dc.description.versionpublished
dc.format.extent12
dc.format.extent5875258
dc.identifier.doi10.1021/acs.accounts.4c00121
dc.identifier.issn0001-4842
dc.identifier.otherPURE: 99833115
dc.identifier.otherPURE UUID: 4fb9ddc1-2d21-49f8-8276-b1a9a56b19e0
dc.identifier.otherScopus: 85194173537
dc.identifier.otherWOS: 001230333000001
dc.identifier.otherPubMed: 38780304
dc.identifier.otherPubMedCentral: PMC11154965
dc.identifier.urihttp://hdl.handle.net/10362/172650
dc.identifier.urlhttps://www.scopus.com/pages/publications/85194173537
dc.language.isoeng
dc.peerreviewedyes
dc.subjectGeneral Chemistry
dc.subjectSDG 3 - Good Health and Well-being
dc.titleUnraveling the Complexity of DNA Radiation Damage Using DNA Nanotechnologyen
dc.typejournal article
degois.publication.firstPage1608
degois.publication.issue11
degois.publication.lastPage1619
degois.publication.titleAccounts of Chemical Research
degois.publication.volume57
dspace.entity.typePublication
rcaap.rightsopenAccess

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