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The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children

dc.contributor.authorPaulo, A. Cristina
dc.contributor.authorLança, João
dc.contributor.authorAlmeida, Sónia T.
dc.contributor.authorHilty, Markus
dc.contributor.authorSá-Leão, Raquel
dc.contributor.institutionInstituto de Tecnologia Química e Biológica António Xavier (ITQB)
dc.contributor.pblSpringer Verlag
dc.date.accessioned2024-04-02T23:18:30Z
dc.date.available2024-04-02T23:18:30Z
dc.date.issued2023-12
dc.descriptionFunding Information: This work was supported by Fundação para a Ciência e a Tecnologia (FCT), I.P., through MOSTMICRO-ITQB R&D Unit (UIDB/04612/2020, UIDP/04612/2020) and LS4FUTURE Associated Laboratory (LA/P/0087/2020). JL and STA were supported by FCT grants UI/BD/153385/2022 and SFRH/BD/108380/2015, respectively. The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. Publisher Copyright: © 2023, BioMed Central Ltd., part of Springer Nature.
dc.description.abstractBackground: The microbiota of the upper respiratory tract is increasingly recognized as a gatekeeper of respiratory health. Despite this, the microbiota of healthy adults remains understudied. To address this gap, we investigated the composition of the nasopharyngeal and oropharyngeal microbiota of healthy adults, focusing on the effect of Streptococcus pneumoniae carriage, smoking habits, and contact with children. Results: Differential abundance analysis indicated that the microbiota of the oropharynx was significantly different from that of the nasopharynx (P < 0.001) and highly discriminated by a balance between the classes Negativicutes and Bacilli (AUC of 0.979). Moreover, the oropharynx was associated with a more homogeneous microbiota across individuals, with just two vs. five clusters identified in the nasopharynx. We observed a shift in the nasopharyngeal microbiota of carriers vs. noncarriers with an increased relative abundance of Streptococcus, which summed up to 30% vs. 10% in noncarriers and was not mirrored in the oropharynx. The oropharyngeal microbiota of smokers had a lower diversity than the microbiota of nonsmokers, while no differences were observed in the nasopharyngeal microbiota. In particular, the microbiota of smokers, compared with nonsmokers, was enriched (on average 16-fold) in potential pathogenic taxa involved in periodontal diseases of the genera Bacillus and Burkholderia previously identified in metagenomic studies of cigarettes. The microbiota of adults with contact with children resembled the microbiota of children. Specifically, the nasopharyngeal microbiota of these adults had, on average, an eightfold increase in relative abundance in Streptococcus sp., Moraxella catarrhalis, and Haemophilus influenzae, pathobionts known to colonize the children’s upper respiratory tract, and a fourfold decrease in Staphylococcus aureus and Staphylococcus lugdunensis. Conclusions: Our study showed that, in adults, the presence of S. pneumoniae in the nasopharynx is associated with a shift in the microbiota and dominance of the Streptococcus genus. Furthermore, we observed that smoking habits are associated with an increase in bacterial genera commonly linked to periodontal diseases. Interestingly, our research also revealed that adults who have regular contact with children have a microbiota enriched in pathobionts frequently carried by children. These findings collectively contribute to a deeper understanding of how various factors influence the upper respiratory tract microbiota in adults. [MediaObject not available: see fulltext.]en
dc.description.versionpublishersversion
dc.description.versionpublished
dc.format.extent7053879
dc.identifier.doi10.1186/s40168-023-01640-9
dc.identifier.issn2049-2618
dc.identifier.otherPURE: 72615133
dc.identifier.otherPURE UUID: b2bf2606-f967-4603-8261-a6b4d6f9d765
dc.identifier.otherScopus: 85169527110
dc.identifier.otherPubMed: 37658443
dc.identifier.otherORCID: /0000-0002-9249-2609/work/156735389
dc.identifier.urihttp://hdl.handle.net/10362/165715
dc.identifier.urlhttps://www.scopus.com/pages/publications/85169527110
dc.language.isoeng
dc.peerreviewedyes
dc.subjectHealthy adults
dc.subjectMicrobiota
dc.subjectNasopharynx
dc.subjectOropharynx
dc.subjectStreptococcus pneumoniae
dc.subjectMicrobiology
dc.subjectMicrobiology (medical)
dc.titleThe upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with childrenen
dc.typejournal article
degois.publication.issue1
degois.publication.titleMicrobiome
degois.publication.volume11
dspace.entity.typePublication
rcaap.rightsopenAccess

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