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Irradiance level and elevation shape the soil microbiome communities of Coffea arabica L.

2024-12Artigo científico Acesso aberto
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dc.contributor.authorTapaça, Inocência da Piedade E.
dc.contributor.authorObieze, Chinedu C.
dc.contributor.authorPereira, Gilberto V.de Melo
dc.contributor.authorFangueiro, David
dc.contributor.authorCoutinho, João
dc.contributor.authorFraga, Irene
dc.contributor.authorPartelli, Fábio L.
dc.contributor.authorRamalho, José C.
dc.contributor.authorMarques, Isabel
dc.contributor.authorRibeiro-Barros, Ana I.
dc.contributor.institutionGeoBioTec - Geobiociências, Geoengenharias e Geotecnologias
dc.contributor.institutionFaculdade de Ciências e Tecnologia (FCT)
dc.contributor.pblBioMed Central (BMC)
dc.date.accessioned2025-02-10T21:17:29Z
dc.date.available2025-02-10T21:17:29Z
dc.date.issued2024-12
dc.descriptionThis work was funded by Camões, Instituto da Cooperação e da Língua (CICL), Agência Brasileira de Cooperação (ABC), and Parque Nacional da Gorongosa (PNG) under the Triangular Project TriCafé (GorongosaCoffee), and by FCT - Fundação para a Ciência e a Tecnologia. Consent for publication: Research permit number: PNG/DSCi/C203/2021 issued by the scientific department of Gorongosa National Park. Publisher Copyright: © The Author(s) 2024.
dc.description.abstractBackground: The nexus plant-microbe-environment is essential to understand the ecosystem processes shaping plant health and fitness. Within this triangle, soils and associated microflora are among the key ecosystem’s drivers, underpinning plant productivity and evolution. In this study, we conducted a comprehensive analysis (physicochemical properties, enzyme activities, and taxonomic diversity) of soils under the canopy projection of Coffea arabica trees along a gradient of elevation (600, 800, and 900 m) and shade (0, 50, 100%). Results: While shade had no influence on most parameters, altitude shaped the dynamics of microbial communities. Available phosphorus, soil organic carbon, and nitrate were significantly higher at 800 m, likely due to the higher activities of β-glucosidase and phosphatases at this altitude. Microbial biomass (carbon and nitrogen) and moisture were significantly higher at 600 and 900 m, which might be attributed to the abundance and richness of soil microorganisms. Indeed, metabarcoding analysis revealed a complex pattern of microbial consortia (bacteria, archaea, fungi) at the three altitudes, with the lowest index of richness recorded at 800 m. The highest number of Amplicon Sequence Variants was observed in bacteria, whose functional analysis revealed distinct metabolic adaptations across different altitudes. At 900 m, the main functional attributes favored the responses to environmental stimuli and microbial interactions; at 800 m, the predominant metabolic pathways were related to organic matter, fermentation, and bioremediation; and at the lower 600 m, the pathways shifted towards the breakdown of plant-derived compounds (e.g. geraniol, limonene, and pinene degradation). Conclusion: Overall, the results indicate a higher effectiveness of the microbial consortium at 800 m, which might result in better nutrient cycling. The study highlights the importance of canopy shade species and elevation for the composition of microbial consortia in C. arabica, unveiling ecological functions beyond plant health, with implications for bio-based solutions and biotechnology.en
dc.description.versionpublishersversion
dc.description.versionpublished
dc.format.extent7188215
dc.identifier.doi10.1186/s40793-024-00619-9
dc.identifier.issn2524-6372
dc.identifier.otherPURE: 107470290
dc.identifier.otherPURE UUID: f443d5bb-d59d-49b6-9db4-364db26d9329
dc.identifier.otherScopus: 85206571139
dc.identifier.otherWOS: 001333506200001
dc.identifier.otherPubMed: 39407337
dc.identifier.urihttp://hdl.handle.net/10362/178762
dc.identifier.urlhttps://www.scopus.com/pages/publications/85206571139
dc.language.isoeng
dc.peerreviewedyes
dc.relationFunding Information: info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F00239%2F2020/PT
dc.relationinfo:eu-repo/grantAgreement/FCT/Concurso para Atribuição do Estatuto e Financiamento de Laboratórios Associados (LA)/LA%2FP%2F0092%2F2020/PT
dc.relationinfo:eu-repo/grantAgreement/FCT/Concurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017%2F2018) - Financiamento Programático/UIDP%2F04035%2F2020/PT
dc.relationinfo:eu-repo/grantAgreement/FCT/Concurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017%2F2018) - Financiamento Base/UIDB%2F04129%2F2020/PT
dc.relationinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F00616%2F2020/PT
dc.relationChemistry Center - Vila Real
dc.relationCentre for the Research and Technology of Agro-Environmental and Biological Sciences
dc.relationSUSTROP: SUStainable management of TROPpical resources: functional genomic innovation into the service of local communities
dc.subjectAgroforestry system
dc.subjectCoffea arabica
dc.subjectEnzymatic activities
dc.subjectGorongosa mountain
dc.subjectMicrobiome
dc.subjectSoil
dc.subjectMicrobiology
dc.subjectApplied Microbiology and Biotechnology
dc.subjectGenetics
dc.subjectSDG 2 - Zero Hunger
dc.subjectSDG 15 - Life on Land
dc.titleIrradiance level and elevation shape the soil microbiome communities of Coffea arabica L.en
dc.typejournal article
degois.publication.issue1
degois.publication.titleEnvironmental Microbiome
degois.publication.volume19
dspace.entity.typePublication
oaire.awardNumberLA/P/0092/2020
oaire.awardNumberUIDP/04035/2020
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oaire.awardNumberUIDB/00616/2020
oaire.awardNumberUIDB/04033/2020
oaire.awardNumber2021.01107.CEECIND/CP1689/CT0001
oaire.awardTitleChemistry Center - Vila Real
oaire.awardTitleCentre for the Research and Technology of Agro-Environmental and Biological Sciences
oaire.awardTitleSUSTROP: SUStainable management of TROPpical resources: functional genomic innovation into the service of local communities
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/Concurso para Atribuição do Estatuto e Financiamento de Laboratórios Associados (LA)/LA%2FP%2F0092%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/Concurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017%2F2018) - Financiamento Programático/UIDP%2F04035%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/Concurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017%2F2018) - Financiamento Base/UIDB%2F04129%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F00616%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04033%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/CEEC IND4ed/2021.01107.CEECIND%2FCP1689%2FCT0001/PT
oaire.fundingStreamConcurso para Atribuição do Estatuto e Financiamento de Laboratórios Associados (LA)
oaire.fundingStreamConcurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017/2018) - Financiamento Programático
oaire.fundingStreamConcurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017/2018) - Financiamento Base
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
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