| Data | Título | Autor(es) | Tipo | Acesso |
| Abr-2025 | A novel tool for multi-omics network integration and visualization | Coletti, Roberta; Carrilho, João F.; Martins, Eduarda P.; Gonçalves, Céline S.; Costa, Bruno M.; Lopes, Marta B. | article |  |
| 5-Mar-2021 | A review of recent machine learning advances for forecasting harmful algal blooms and shellfish contamination | Cruz, Rafaela C.; Costa, Pedro Reis; Vinga, Susana; Krippahl, Ludwig; Lopes, Marta B. | review | |
| 22-Nov-2023 | A toolbox of machine learning software to support microbiome analysis | Marcos-Zambrano, Laura Judith; López-Molina, Víctor Manuel; Bakir-Gungor, Burcu; Frohme, Marcus; Karaduzovic-Hadziabdic, Kanita; Klammsteiner, Thomas; Ibrahimi, Eliana; Lahti, Leo; Loncar-Turukalo, Tatjana; Dhamo, Xhilda; Simeon, Andrea; Nechyporenko, Alina; Pio, Gianvito; Przymus, Piotr; Sampri, Alexia; Trajkovik, Vladimir; Lacruz-Pleguezuelos, Blanca; Aasmets, Oliver; Araújo, Ricardo; Anagnostopoulos, Ioannis; Aydemir, Önder; Berland, Magali; Calle, M. Luz; Ceci, Michelangelo; Duman, Hatice; Gündoğdu, Aycan; Havulinna, Aki S.; Kaka Bra, Kardokh Hama Najib; Kalluci, Eglantina; Karav, Sercan; Lode, Daniel; Lopes, Marta B.; May, Patrick; Nap, Bram; Nedyalkova, Miroslava; Paciência, Inês; Pasic, Lejla; Pujolassos, Meritxell; Shigdel, Rajesh; Susín, Antonio; Thiele, Ines; Truică, Ciprian Octavian; Wilmes, Paul; Yilmaz, Ercument; Yousef, Malik; Claesson, Marcus Joakim; Truu, Jaak; Carrillo de Santa Pau, Enrique | review | |
| Set-2023 | Advancing microbiome research with machine learning | D’Elia, Domenica; Truu, Jaak; Lahti, Leo; Berland, Magali; Papoutsoglou, Georgios; Ceci, Michelangelo; Zomer, Aldert; Lopes, Marta B.; Ibrahimi, Eliana; Gruca, Aleksandra; Nechyporenko, Alina; Frohme, Marcus; Klammsteiner, Thomas; Pau, Enrique Carrillo de Santa; Marcos-Zambrano, Laura Judith; Hron, Karel; Pio, Gianvito; Simeon, Andrea; Suharoschi, Ramona; Moreno-Indias, Isabel; Temko, Andriy; Nedyalkova, Miroslava; Apostol, Elena Simona; Truică, Ciprian Octavian; Shigdel, Rajesh; Telalović, Jasminka Hasić; Bongcam-Rudloff, Erik; Przymus, Piotr; Jordamović, Naida Babić; Falquet, Laurent; Tarazona, Sonia; Sampri, Alexia; Isola, Gaetano; Pérez-Serrano, David; Trajkovik, Vladimir; Klucar, Lubos; Loncar-Turukalo, Tatjana; Havulinna, Aki S.; Jansen, Christian; Bertelsen, Randi J.; Claesson, Marcus Joakim | article | |
| 19-Fev-2021 | Applications of Machine Learning in Human Microbiome Studies | ML4 Microbiome; Lopes, Marta B. | review | |
| 31-Dez-2022 | Classification and biomarker selection in lower-grade glioma using robust sparse logistic regression applied to RNA-seq data | Carrilho, João F.; Lopes, Marta B. | article | |
| 5-Dez-2022 | Forecasting biotoxin contamination in mussels across production areas of the Portuguese coast with Artificial Neural Networks | Cruz, Rafaela C.; Costa, Pedro R.; Krippahl, Ludwig; Lopes, Marta B. | article | |
| Dez-2023 | Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization | Peixoto, Carolina; Lopes, Marta B.; Martins, Marta; Casimiro, Sandra; Sobral, Daniel; Grosso, Ana Rita; Abreu, Catarina; Macedo, Daniela; Costa, Ana Lúcia; Pais, Helena; Alvim, Cecília; Mansinho, André; Filipe, Pedro; Costa, Pedro Marques da; Fernandes, Afonso; Borralho, Paula; Ferreira, Cristina; Malaquias, João; Quintela, António; Kaplan, Shannon; Golkaram, Mahdi; Salmans, Michael; Khan, Nafeesa; Vijayaraghavan, Raakhee; Zhang, Shile; Pawlowski, Traci; Godsey, Jim; So, Alex; Liu, Li; Costa, Luís; Vinga, Susana | article | |
| 1-Jan-2024 | Inferring Diagnostic and Prognostic Gene Expression Signatures Across WHO Glioma Classifications | Coletti, Roberta; Leiria de Mendonça, Mónica; Vinga, Susana; Lopes, Marta B. | article | |
| 1-Jan-2024 | Integration of Multi-Omics Data for the Classification of Glioma Types and Identification of Novel Biomarkers | Vieira, Francisca G.; Bispo, Regina; Lopes, Marta B. | article | |
| 22-Set-2023 | Machine learning approaches in microbiome research | Papoutsoglou, Georgios; Tarazona, Sonia; Lopes, Marta B.; Klammsteiner, Thomas; Ibrahimi, Eliana; Eckenberger, Julia; Novielli, Pierfrancesco; Tonda, Alberto; Simeon, Andrea; Shigdel, Rajesh; Béreux, Stéphane; Vitali, Giacomo; Tangaro, Sabina; Lahti, Leo; Temko, Andriy; Claesson, Marcus J.; Berland, Magali | review | |
| 12-Mai-2025 | Multi-technique computational assessment of fluoride uptake in enamel using PIGE, NEXAFS, and Raman spectroscopy | Pessanha, Sofia; Fortes, António; Lopes, Marta B.; Guilherme Buzanich, Ana; Ortega-Feliu, Inés; Respaldiza, Miguel A.; Gomez Tubio, Blanca; Makarova, Anna; Smirnov, Dmitry; Kumar, Sourabh; Mata, António; Silveira, João | article | |
| Out-2023 | Overview of data preprocessing for machine learning applications in human microbiome research | Ibrahimi, Eliana; Lopes, Marta B.; Dhamo, Xhilda; Simeon, Andrea; Shigdel, Rajesh; Hron, Karel; Stres, Blaž; D’Elia, Domenica; Berland, Magali; Marcos-Zambrano, Laura Judith | review | |
| Dez-2024 | Priority-Elastic net for binary disease outcome prediction based on multi-omics data | Musib, Laila; Coletti, Roberta; Lopes, Marta B.; Mouriño, Helena; Carrasquinha, Eunice | article | |
| Mai-2022 | ROSIE | Jensch, Antje; Lopes, Marta B.; Vinga, Susana; Radde, Nicole | article | |
| Nov-2020 | Tcox: Correlation-based regularization applied to colorectal cancer survival data | Peixoto, Carolina; Lopes, Marta B.; Martins, Marta; Costa, Luís; Vinga, Susana | article | |
| 10-Jan-2025 | The Omics-Driven Machine Learning Path to Cost-Effective Precision Medicine in Chronic Kidney Disease | Lopes, Marta B.; Coletti, Roberta; Duranton, Flore; Glorieux, Griet; Jaimes Campos, Mayra Alejandra; Klein, Julie; Ley, Matthias; Perco, Paul; Sampri, Alexia; Tur-Sinai, Aviad | review | |
| 2-Mar-2021 | The role of network science in glioblastoma | Lopes, Marta B.; Martins, Eduarda P.; Vinga, Susana; Costa, Bruno M. | review | |
| 30-Set-2022 | Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions | Patrício, André; Lopes, Marta B.; Costa, Pedro Reis; Costa, Rafael S.; Henriques, Rui; Martins, Susana de Almeida Mendes Vinga | article | |
| Dez-2025 | Updating TCGA glioma classification through integration of molecular data following the latest WHO guidelines | de Mendonça, Mónica Leiria; Coletti, Roberta; Gonçalves, Céline S.; Martins, Eduarda P.; Costa, Bruno M.; Vinga, Susana; Lopes, Marta B. | article | |
